ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6opdB1 - ECOD Domain | ECOD

ECOD/Domains/e6opdB1

e6opdB1

UID: 002536032

PDB

Range: B:1-100
PDB: 6OPD chain B(all domains)
UniProt: P61769 (all domains)
Gene: B2M

Molecule: Beta-2-microglobulin

3D Structure

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Related Domains

Browse other domains in C1-set →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupImmunoglobulin-like beta-sandwich(11)

HH-groupImmunoglobulin-related(11.1)

TT-groupImmunoglobulin/Fibronectin type III/E set domains/PapD-like(11.1.1)

FFamilyC1-set(11.1.1.96)

Ligands

in contact, ≤ 4 Å

Magnesium ionMG
metal

+ 2 additives (Acetate, Glycerin)

AcetateACT
DrugBank DB14511
Glycerin

Pfam Families

Immunoglobulin C1-set domain

ClanCL0159E-set

External Links

ECOD PDB View: 6OPD RCSB PDB: 6OPD PDBe: 6OPD UniProt: P61769

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB09462

Shown in the structure viewer. Drug annotations from DrugDomain.