ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6p1mA1 - ECOD Domain | ECOD

ECOD/Domains/e6p1mA1

e6p1mA1

UID: 002536510

PDB

Range: A:138-229
PDB: 6P1M chain A(all domains)
UniProt: Q9NP87 (all domains)
Gene: POLM

Molecule: DNA-directed DNA/RNA polymerase mu

3D Structure

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Related Domains

Browse other domains in HHH_8 →

Classification

AArchitecturealpha arrays(a.6)

XX-groupHhH/H2TH(102)

HH-groupSAM/DNA-glycosylase(102.1)

TT-groupSAM domain-like(102.1.1)

FFamilyHHH_8(102.1.1.30)

Ligands

in contact, ≤ 4 Å

Carbon dioxideCO2
drugDrugBank DB09157within 5 Å only
Chloride ionCL

+ 1 additive (1,2-ETHANEDIOL)

1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

Helix-hairpin-helix domain

ClanCL0198HHH

External Links

ECOD PDB View: 6P1M RCSB PDB: 6P1M PDBe: 6P1M UniProt: Q9NP87

Downloads

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