ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e6s08A1 - ECOD Domain | ECOD

ECOD/Domains/e6s08A1

e6s08A1

UID: 002538484

PDB

Range: A:255-372
PDB: 6S08 chain A(all domains)
UniProt: P27918 (all domains)
Gene: CFP

Molecule: Properdin

3D Structure

Loading viewer...

Related Domains

Browse other domains in TSP_1 →

Classification

AArchitecturefew secondary structure elements(a.19)

XX-groupTSP-1 type 1 repeat(922)

HH-groupTSP-1 type 1 repeat(922.1)

TT-groupTSP-1 type 1 repeat(922.1.1)

FFamilyTSP_1(922.1.1.1)

Ligands

in contact, ≤ 4 Å

alpha-L-fucoseFUC
drugDrugBank DB04473within 5 Å only
alpha-D-mannopyranoseMAN
Sodium ionNA
metal

+ 1 additive (Triethylene glycol)

Pfam Families

Thrombospondin type 1 domain

ClanCL0692TSP1

External Links

ECOD PDB View: 6S08 RCSB PDB: 6S08 PDBe: 6S08 UniProt: P27918

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Triethylene glycolPGE
DrugBank DB02327

Shown in the structure viewer. Drug annotations from DrugDomain.