ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6s8nF1 - ECOD Domain | ECOD

ECOD/Domains/e6s8nF1

e6s8nF1

UID: 002538665

PDB

Range: F:2-132,F:262-353
PDB: 6S8N chain F(all domains)
UniProt: P0AFA1 (all domains)
Gene: lptF

Molecule: Lipopolysaccharide export system permease protein LptF

3D Structure

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Related Domains

Browse other domains in LptF_LptG →

Classification

AArchitecturealpha bundles(a.7)

XX-groupType II ABC exporter transmembrane domain fold(1075)

HH-groupType II ABC exporter transmembrane domain-related(1075.1)

TT-groupABCG5/ABCG8 transmembrane domain(1075.1.1)

FFamilyLptF_LptG(1075.1.1.2)

Ligands

in contact, ≤ 4 Å

2-decyl-5,6-dimethoxy-3-methylcyclohexa-2,5-diene-1,4-dioneDCQ
drugDrugBank DB07640
lipopolysaccharide fragmentL0W

+ 2 additives (Lauryl Maltose Neopentyl Glycol, Dodecyl-beta-d-maltoside)

Pfam Families

PF03739LptF_LptG

Lipopolysaccharide export system permease LptF/LptG

ClanCL0404BPD_transp_1

External Links

ECOD PDB View: 6S8N RCSB PDB: 6S8N PDBe: 6S8N UniProt: P0AFA1

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Lauryl Maltose Neopentyl Glycol

Dodecyl-beta-d-maltosideLMT

Shown in the structure viewer. Drug annotations from DrugDomain.