ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6secA1 - ECOD Domain | ECOD

ECOD/Domains/e6secA1

e6secA1

UID: 002538701

PDB

Range: A:312-605
PDB: 6SEC chain A(all domains)
UniProt: A0A023UGN9 (all domains)

Molecule: Beta-galactosidase

3D Structure

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Related Domains

Browse other domains in Glyco_hydro_2_C →

Classification

AArchitecturea/b barrels(a.16)

XX-groupTIM beta/alpha-barrel(2002)

HH-groupTIM barrels(2002.1)

TT-groupTIM barrels(2002.1.1)

FFamilyGlyco_hydro_2_C(2002.1.1.104)

Ligands

in contact, ≤ 4 Å

1-O-[O-Nitrophenyl]-Beta-D-Galactopyranose145
drugDrugBank DB01920
Sodium ionNA
metal

+ 1 additive (Acetate ion)

Acetate ionACT

Pfam Families

PF02836Glyco_hydro_2_C

Glycosyl hydrolases family 2, TIM barrel domain

ClanCL0036TIM_barrel

External Links

ECOD PDB View: 6SEC RCSB PDB: 6SEC PDBe: 6SEC UniProt: A0A023UGN9

Downloads

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Shown in the structure viewer. Drug annotations from DrugDomain.