ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6skqB1 - ECOD Domain | ECOD

ECOD/Domains/e6skqB1

e6skqB1

UID: 002538741

PDB

Range: B:63-160
PDB: 6SKQ chain B(all domains)
UniProt: A0A386YIZ1 (all domains)
Gene: blaOXA-655

Molecule: Beta-lactamase

3D Structure

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Related Domains

Browse other domains in Transpeptidase →

Classification

AArchitecturealpha complex topology(a.10)

XX-groupalpha-helical domain in beta-lactamase/transpeptidase-like proteins(4019)

HH-groupalpha-helical domain in beta-lactamase/transpeptidase-like proteins(4019.1)

TT-groupalpha-helical domain in beta-lactamase/transpeptidase-like proteins(4019.1.1)

FFamilyTranspeptidase(4019.1.1.3)

Ligands

in contact, ≤ 4 Å

(4R,5S)-3-{[(3S,5S)-5-(dimethylcarbamoyl)pyrrolidin-3-yl]sulfanyl}-5-[(2S,3R)-3-hydroxy-1-oxobutan-2-yl]-4-methyl-4,5-dihydro-1H-pyrrole-2-carboxylic acidMER

+ 1 additive (Sulfate ion)

Sulfate ionSO4
DrugBank DB14546

Shown in the structure viewer.

Pfam Families

PF00905Transpeptidase

Penicillin binding protein transpeptidase domain

ClanCL0013Beta-lactamase

External Links

ECOD PDB View: 6SKQ RCSB PDB: 6SKQ PDBe: 6SKQ UniProt: A0A386YIZ1

Downloads

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Drug annotations from DrugDomain.