ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e6seiC1 - ECOD Domain | ECOD

ECOD/Domains/e6seiC1

e6seiC1

UID: 002540520

PDB

Range: C:4-174,C:197-238
PDB: 6SEI chain C(all domains)
UniProt: G2QV68 (all domains)
Gene: THITE_2107775

Molecule: Structure-specific endonuclease subunit SLX1

3D Structure

Loading viewer...

Related Domains

Browse other domains in GIY-YIG →

Classification

AArchitecturea+b three layers(a.12)

XX-groupGIY-YIG endonuclease(821)

HH-groupGIY-YIG endonuclease(821.1)

TT-groupGIY-YIG endonuclease(821.1.1)

FFamilyGIY-YIG(821.1.1.1)

Ligands

in contact, ≤ 4 Å

Calcium ionCA
metal
Zinc ionZN
metal

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF01541GIY-YIG

GIY-YIG catalytic domain

ClanCL0418GIY-YIG

External Links

ECOD PDB View: 6SEI RCSB PDB: 6SEI PDBe: 6SEI UniProt: G2QV68

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure