ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6jplB1 - ECOD Domain | ECOD

ECOD/Domains/e6jplB1

e6jplB1

UID: 002540621

PDB

Range: B:9-212,B:233-259
PDB: 6JPL chain B(all domains)
UniProt: P38238 (all domains)
Gene: TRM7

Molecule: tRNA (cytidine(34)/guanosine(34)-2'-O)-methyltransferase

3D Structure

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Related Domains

Browse other domains in FtsJ →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRossmann-like(2003)

HH-groupRossmann-related(2003.1)

TT-groupS-adenosyl-L-methionine-dependent methyltransferases(2003.1.5)

FFamilyFtsJ(2003.1.5.15)

Ligands

in contact, ≤ 4 Å

AdemetionineSAM
drugDrugBank DB00118

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

FtsJ-like methyltransferase

ClanCL0063NADP_Rossmann

External Links

ECOD PDB View: 6JPL RCSB PDB: 6JPL PDBe: 6JPL UniProt: P38238

Downloads

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