ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6k61m1 - ECOD Domain | ECOD

ECOD/Domains/e6k61m1

e6k61m1

UID: 002540681

PDB

Range: m:2-32
PDB: 6K61 chain m(all domains)
UniProt: Q8YNB0 (all domains)
Gene: psaM

Molecule: Photosystem I reaction center subunit XII

3D Structure

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Related Domains

Browse other domains in PsaM →

Classification

AArchitectureextended segments(a.20)

XX-groupSubunit XII of photosystem I reaction centre, PsaM(5022)

HH-groupSubunit XII of photosystem I reaction centre, PsaM(5022.1)

TT-groupSubunit XII of photosystem I reaction centre, PsaM(5022.1.1)

FFamilyPsaM(5022.1.1.1)

Ligands

in contact, ≤ 4 Å

Beta caroteneBCR
drugDrugBank DB06755
Chlorophyll ACLA
drugDrugBank DB02133
1,2-Dipalmitoyl-Phosphatidyl-Glycerole

Pfam Families

Photosystem I protein M (PsaM)

External Links

ECOD PDB View: 6K61 RCSB PDB: 6K61 PDBe: 6K61 UniProt: Q8YNB0

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

drugDrugBank DB02043

1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROLSQD

within 5 Å only

Shown in the structure viewer. Drug annotations from DrugDomain.