ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6hooA1 - ECOD Domain | ECOD

ECOD/Domains/e6hooA1

e6hooA1

UID: 002541646

PDB

Range: A:21-64,A:162-271
PDB: 6HOO chain A(all domains)
UniProt: Q6XEC0 (all domains)
Gene: OXA-48

Molecule: Beta-lactamase,OXA-48loop18,Beta-lactamase

3D Structure

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Related Domains

Browse other domains in Transpeptidase →

Classification

AArchitecturea+b three layers(a.12)

XX-groupProfilin-like(223)

HH-groupa+b domain in beta-lactamase/transpeptidase-like proteins(223.3)

TT-groupa+b domain in beta-lactamase/transpeptidase-like proteins(223.3.1)

FFamilyTranspeptidase(223.3.1.3)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 2 additives (Glycerin, Sulfate ion)

GlycerinGOL
DrugBank DB09462
Sulfate ionSO4
DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF00905Transpeptidase

Penicillin binding protein transpeptidase domain

ClanCL0013Beta-lactamase

External Links

ECOD PDB View: 6HOO RCSB PDB: 6HOO PDBe: 6HOO UniProt: Q6XEC0

Downloads

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