ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6rkoB1 - ECOD Domain | ECOD

ECOD/Domains/e6rkoB1

e6rkoB1

UID: 002542982

PDB

Range: B:2-161
PDB: 6RKO chain B(all domains)
UniProt: P0ABK2 (all domains)
Gene: cydB

Molecule: Cytochrome bd-I ubiquinol oxidase subunit 2

3D Structure

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Related Domains

Browse other domains in Cyt_bd_oxida_II →

Classification

AArchitecturealpha bundles(a.7)

XX-groupTransmembrane heme-binding four-helical bundle(5069)

HH-groupTransmembrane heme-binding four-helical bundle(5069.1)

TT-groupTransmembrane di-heme cytochromes(5069.1.1)

FFamilyCyt_bd_oxida_II(5069.1.1.5)

Ligands

in contact, ≤ 4 Å

Cis-heme d hydroxychlorin gamma-spirolactoneHDD
(2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphatePOV
Ubiquinone-8UQ8

Pfam Families

PF02322Cyt_bd_oxida_II

Cytochrome bd terminal oxidase subunit II

External Links

ECOD PDB View: 6RKO RCSB PDB: 6RKO PDBe: 6RKO UniProt: P0ABK2

Downloads

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Shown in the structure viewer. Drug annotations from DrugDomain.