ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6jlnm1 - ECOD Domain | ECOD

ECOD/Domains/e6jlnm1

e6jlnm1

UID: 002544811

PDB

Range: m:1-34
PDB: 6JLN chain m(all domains)
UniProt: P12312 (all domains)
Gene: psbM

Molecule: Photosystem II reaction center protein M

3D Structure

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Related Domains

Browse other domains in PsbM →

Classification

AArchitectureextended segments(a.20)

XX-groupPhotosystem II reaction center protein M, PsbM(5033)

HH-groupPhotosystem II reaction center protein M, PsbM(5033.1)

TT-groupPhotosystem II reaction center protein M, PsbM(5033.1.1)

FFamilyPsbM(5033.1.1.1)

Ligands

in contact, ≤ 4 Å

1,2-Dipalmitoyl-Phosphatidyl-GlyceroleLHG
drugDrugBank DB02043
Beta-caroteneBCR
Chlorophyll aCLA
1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDELMG

Pfam Families

Photosystem II reaction centre M protein (PsbM)

External Links

ECOD PDB View: 6JLN RCSB PDB: 6JLN PDBe: 6JLN UniProt: P12312

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROLSQD

Unknown ligandUNL

Calcium ionCA

metalwithin 5 Å only

+ 2 additives (Glycerol, Dodecyl-beta-d-maltoside)

GlycerolGOL
Dodecyl-beta-d-maltosideLMT

Shown in the structure viewer. Drug annotations from DrugDomain.