ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e6jlnR1 - ECOD Domain | ECOD

ECOD/Domains/e6jlnR1

e6jlnR1

UID: 002544826

PDB

Range: R:2-31
PDB: 6JLN chain R(all domains)
UniProt: P0DM37 (all domains)
Gene: psbY

Molecule: Photosystem II protein Y

3D Structure

Loading viewer...

Related Domains

Browse other domains in PsbY →

Classification

AArchitectureextended segments(a.20)

XX-groupPhotosystem II protein Y, psbY(6106)

HH-groupPhotosystem II protein Y, psbY(6106.1)

TT-groupPhotosystem II protein Y, psbY(6106.1.1)

FFamilyPsbY(6106.1.1.1)

Ligands

in contact, ≤ 4 Å

Digalactosyl Diacyl Glycerol (Dgdg)DGD
drugDrugBank DB03426
FerrohemeHEM
drugDrugBank DB18267

Pfam Families

Photosystem II protein Y (PsbY)

External Links

ECOD PDB View: 6JLN RCSB PDB: 6JLN PDBe: 6JLN UniProt: P0DM37

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL

Shown in the structure viewer. Drug annotations from DrugDomain.