ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6rk4A1 - ECOD Domain | ECOD

ECOD/Domains/e6rk4A1

e6rk4A1

UID: 002545065

PDB

Range: A:401-493
PDB: 6RK4 chain A(all domains)
UniProt: P10547 (all domains)
Gene: lss

Molecule: Lysostaphin

3D Structure

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Related Domains

Browse other domains in SH3_5 →

Classification

AArchitecturebeta barrels(a.1)

XX-groupSH3(4)

HH-groupSH3(4.1)

TT-groupSH3(4.1.1)

FFamilySH3_5(4.1.1.59)

Ligands

in contact, ≤ 4 Å

(2~{R})-2-[[(2~{S})-2-[[(4~{R})-5-azanyl-4-[[(2~{S})-2-azanylpropanoyl]amino]-5-oxidanylidene-pentanoyl]amino]-6-[2-[2-[2-[2-(2-azanylethanoylamino)ethanoylamino]ethanoylamino]ethanoylamino]ethanoylamino]hexanoyl]amino]propanoic acidK5T

+ 1 additive (1,2-ETHANEDIOL)

1,2-ETHANEDIOLEDO

Shown in the structure viewer.

Pfam Families

Bacterial SH3 domain

ClanCL0010SH3

External Links

ECOD PDB View: 6RK4 RCSB PDB: 6RK4 PDBe: 6RK4 UniProt: P10547

Downloads

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Drug annotations from DrugDomain.