ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6oneA2 - ECOD Domain | ECOD

ECOD/Domains/e6oneA2

e6oneA2

UID: 002547617

PDB

Range: A:43-255,A:474-491
PDB: 6ONE chain A(all domains)
UniProt: A0A0M3KKW9 (all domains)
Gene: HIV-1

Molecule: clade A/E 93TH057 HIV-1 gp120 core

3D Structure

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Related Domains

Browse other domains in GP120 →

Classification

AArchitecturea+b two layers(a.11)

XX-groupgp120 inner domain(1061)

HH-groupgp120 inner domain(1061.1)

TT-groupgp120 inner domain(1061.1.1)

FFamilyGP120(1061.1.1.1)

Ligands

in contact, ≤ 4 Å

methyl (3S)-3-[(4-chloro-3-fluorophenyl)carbamoyl]piperidine-1-carboxylateMVY
2-acetamido-2-deoxy-beta-D-glucopyranoseNAG

+ 1 additive (HEPES)

HEPESEPE

Pfam Families

Envelope glycoprotein GP120

External Links

ECOD PDB View: 6ONE RCSB PDB: 6ONE PDBe: 6ONE UniProt: A0A0M3KKW9

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB16872

Shown in the structure viewer. Drug annotations from DrugDomain.