ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6sqgE1 - ECOD Domain | ECOD

ECOD/Domains/e6sqgE1

e6sqgE1

UID: 002549628

PDB

Range: E:1-212
PDB: 6SQG chain E(all domains)
UniProt: F2Y2Z0 (all domains)

Molecule: viral rhodopsin OLPVRII

3D Structure

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Related Domains

Browse other domains in Bac_rhodopsin →

Classification

AArchitecturealpha bundles(a.7)

XX-groupFamily A G protein-coupled receptor-like(5001)

HH-groupFamily A G protein-coupled receptor-like(5001.1)

TT-groupFamily A G protein-coupled receptor-like(5001.1.1)

FFamilyBac_rhodopsin(5001.1.1.6)

Ligands

in contact, ≤ 4 Å

EicosaneLFA
(2S)-2,3-dihydroxypropyl (9Z)-octadec-9-enoateOLB
RetinalRET

Shown in the structure viewer.

Pfam Families

PF01036Bac_rhodopsin

Bacteriorhodopsin-like protein

ClanCL0192GPCR_A

External Links

ECOD PDB View: 6SQG RCSB PDB: 6SQG PDBe: 6SQG UniProt: F2Y2Z0

Downloads

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Drug annotations from DrugDomain.