ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6myqB1 - ECOD Domain | ECOD

ECOD/Domains/e6myqB1

e6myqB1

UID: 002550558

PDB

Range: B:115-247
PDB: 6MYQ chain B(all domains)
UniProt: Q9YHT2 (all domains)
Gene: SDHB

Molecule: Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial

3D Structure

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Related Domains

Browse other domains in Fer4_17 →

Classification

AArchitecturealpha arrays(a.6)

XX-groupalpha-helical ferredoxin-like(187)

HH-groupalpha-helical ferredoxin(187.1)

TT-groupalpha-helical ferredoxin(187.1.1)

FFamilyFer4_17(187.1.1.4)

Ligands

in contact, ≤ 4 Å

FerrohemeHEM
drugDrugBank DB18267
Undecyl-Beta-D-MaltopyranosideUMQ
drugDrugBank DB02686

Pfam Families

PF13534Fer4_17

4Fe-4S dicluster domain

ClanCL03444Fe-4S

External Links

ECOD PDB View: 6MYQ RCSB PDB: 6MYQ PDBe: 6MYQ UniProt: Q9YHT2

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

4-oxidanyl-3-[(2~{E},6~{E})-3,7,11-trimethyldodeca-2,6,10-trienyl]chromen-2-one

FE3-S4 CLUSTERF3S

Potassium ionK

metal

Iron/sulfur clusterSF4

Unknown ligandUNL

FE2/S2 (INORGANIC) CLUSTERFES

within 5 Å only

Shown in the structure viewer. Drug annotations from DrugDomain.