ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e1jbmB1 - ECOD Domain | ECOD

ECOD/Domains/e1jbmB1

e1jbmB1

UID: 000025508

PDB

Range: B:10-82
PDB: 1JBM chain B(all domains)
UniProt: O26745 (all domains)
Gene: MTH_649

Molecule: PUTATIVE SNRNP SM-LIKE PROTEIN

3D Structure

Loading viewer...

Related Domains

Browse other domains in LSM →

Classification

AArchitecturebeta barrels(a.1)

XX-groupSH3(4)

HH-groupSH3(4.1)

TT-groupSH3(4.1.1)

FFamilyLSM(4.1.1.19)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 2 additives (Acetic acid, 1,2-ETHANEDIOL)

Acetic acidACY
DrugBank DB03166
1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

LSM domain

ClanCL0986Sm-like

External Links

ECOD PDB View: 1JBM RCSB PDB: 1JBM PDBe: 1JBM UniProt: O26745

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure