ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6u00A1 - ECOD Domain | ECOD

ECOD/Domains/e6u00A1

e6u00A1

UID: 002550896

PDB

Range: A:409-630
PDB: 6U00 chain A(all domains)
UniProt: P43075 (all domains)
Gene: LIG1

Molecule: tRNA ligase

3D Structure

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Related Domains

Browse other domains in tRNA_lig_kinase →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupP-loop domains-like(2004)

HH-groupP-loop domains-related(2004.1)

TT-groupP-loop containing nucleoside triphosphate hydrolases(2004.1.1)

FFamilytRNA_lig_kinase(2004.1.1.284)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 1 additive (Phosphate ion)

Phosphate ionPO4
DrugBank DB14523

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF08303tRNA_lig_kinase

tRNA ligase kinase domain

ClanCL0023P-loop_NTPase

External Links

ECOD PDB View: 6U00 RCSB PDB: 6U00 PDBe: 6U00 UniProt: P43075

Downloads

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