ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6rqfJ1 - ECOD Domain | ECOD

ECOD/Domains/e6rqfJ1

e6rqfJ1

UID: 002551090

PDB

Range: J:1-160
PDB: 6RQF chain J(all domains)
UniProt: P00166 (all domains)
Gene: petD

Molecule: Cytochrome b6-f complex subunit 4

3D Structure

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Related Domains

Browse other domains in Cytochrom_B_C →

Classification

AArchitecturealpha bundles(a.7)

XX-groupa domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)(5068)

HH-groupa domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)(5068.1)

TT-groupa domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)(5068.1.1)

FFamilyCytochrom_B_C(5068.1.1.1)

Ligands

in contact, ≤ 4 Å

Beta caroteneBCR
drugDrugBank DB06755
Chlorophyll ACLA
drugDrugBank DB02133
Ferroheme C

Pfam Families

PF00032Cytochrom_B_C

Cytochrome b(C-terminal)/b6/petD

External Links

ECOD PDB View: 6RQF RCSB PDB: 6RQF PDBe: 6RQF UniProt: P00166

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

drugDrugBank DB03317

(4S,7R)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSAN-1-AMINIUM 4-OXIDE6PL

1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDELMG

(1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATEPGV

2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONEPL9

1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROLSQD

Shown in the structure viewer. Drug annotations from DrugDomain.