ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6knhA1 - ECOD Domain | ECOD

ECOD/Domains/e6knhA1

e6knhA1

UID: 002552697

PDB

Range: A:27-275
PDB: 6KNH chain A(all domains)
UniProt: A0A0H3JPF2 (all domains)
Gene: SAV0123

Molecule: Probable diaminopimelate decarboxylase protein

3D Structure

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Related Domains

Browse other domains in Orn_Arg_deC_N →

Classification

AArchitecturea/b barrels(a.16)

XX-groupTIM beta/alpha-barrel(2002)

HH-groupTIM barrels(2002.1)

TT-groupTIM barrels(2002.1.1)

FFamilyOrn_Arg_deC_N(2002.1.1.101)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 2 additives (Citric acid, Phosphate ion)

Citric acidCIT
DrugBank DB04272
Phosphate ionPO4
DrugBank DB14523

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF02784Orn_Arg_deC_N

Pyridoxal-dependent decarboxylase, pyridoxal binding domain

ClanCL0036TIM_barrel

External Links

ECOD PDB View: 6KNH RCSB PDB: 6KNH PDBe: 6KNH UniProt: A0A0H3JPF2

Downloads

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