ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e6knhC2 - ECOD Domain | ECOD

ECOD/Domains/e6knhC2

e6knhC2

UID: 002552702

PDB

Range: C:2-26,C:275-394
PDB: 6KNH chain C(all domains)
UniProt: A0A0H3JPF2 (all domains)
Gene: SAV0123

Molecule: Probable diaminopimelate decarboxylase protein

3D Structure

Loading viewer...

Related Domains

Browse other domains in Orn_DAP_Arg_deC →

Classification

AArchitecturebeta barrels(a.1)

XX-groupcradle loop barrel(1)

HH-groupRIFT-related(1.1)

TT-groupAlanine racemase-C(1.1.7)

FFamilyOrn_DAP_Arg_deC(1.1.7.1)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 2 additives (Citric acid, Phosphate ion)

Citric acidCIT
DrugBank DB04272
Phosphate ionPO4
DrugBank DB14523

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF00278Orn_DAP_Arg_deC

Pyridoxal-dependent decarboxylase, C-terminal sheet domain

ClanCL0866ALR_C-like

External Links

ECOD PDB View: 6KNH RCSB PDB: 6KNH PDBe: 6KNH UniProt: A0A0H3JPF2

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure