ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6knkA1 - ECOD Domain | ECOD

ECOD/Domains/e6knkA1

e6knkA1

UID: 002552709

PDB

Range: A:1-26,A:275-395
PDB: 6KNK chain A(all domains)
UniProt: A0A0H3JPF2 (all domains)
Gene: SAV0123

Molecule: Probable diaminopimelate decarboxylase protein

3D Structure

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Related Domains

Browse other domains in Orn_DAP_Arg_deC →

Classification

AArchitecturebeta barrels(a.1)

XX-groupcradle loop barrel(1)

HH-groupRIFT-related(1.1)

TT-groupAlanine racemase-C(1.1.7)

FFamilyOrn_DAP_Arg_deC(1.1.7.1)

Ligands

in contact, ≤ 4 Å

(2~{S})-2-[2-[2-[[2-methyl-3-oxidanyl-5-(phosphonooxymethyl)pyridin-4-yl]methylamino]ethylamino]-2-oxidanylidene-ethyl]-2-oxidanyl-butanedioic acidDN9
(2S)-2-{2-[(2-AMINOETHYL)AMINO]-2-OXOETHYL}-2-HYDROXYBUTANEDIOIC ACIDX3J

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF00278Orn_DAP_Arg_deC

Pyridoxal-dependent decarboxylase, C-terminal sheet domain

ClanCL0866ALR_C-like

External Links

ECOD PDB View: 6KNK RCSB PDB: 6KNK PDBe: 6KNK UniProt: A0A0H3JPF2

Downloads

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