ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6n0nB2 - ECOD Domain | ECOD

ECOD/Domains/e6n0nB2

e6n0nB2

UID: 002552776

PDB

Range: B:351-607
PDB: 6N0N chain B(all domains)
UniProt: Q9NUW8 (all domains)
Gene: TDP1

Molecule: Tyrosyl-DNA phosphodiesterase 1

3D Structure

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Related Domains

Browse other domains in Tyr-DNA_phospho →

Classification

AArchitecturea+b three layers(a.12)

XX-groupPhospholipase D/nuclease(300)

HH-groupPhospholipase D/nuclease(300.1)

TT-groupPhospholipase D/nuclease(300.1.1)

FFamilyTyr-DNA_phospho(300.1.1.3)

Ligands

in contact, ≤ 4 Å

4-methylbenzene-1,2-dicarboxylic acidKAY

+ 2 additives (Dimethyl sulfoxide, 1,2-ETHANEDIOL)

Dimethyl sulfoxideDMS
DrugBank DB01093
1,2-ETHANEDIOLEDO

Pfam Families

PF06087Tyr-DNA_phospho

Tyrosyl-DNA phosphodiesterase

ClanCL0479PLD

External Links

ECOD PDB View: 6N0N RCSB PDB: 6N0N PDBe: 6N0N UniProt: Q9NUW8

Downloads

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Shown in the structure viewer. Drug annotations from DrugDomain.