ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6q4oC5 - ECOD Domain | ECOD

ECOD/Domains/e6q4oC5

e6q4oC5

UID: 002553072

PDB

Range: C:1-37,C:331-498
PDB: 6Q4O chain C(all domains)
UniProt: P31224 (all domains)
Gene: acrB

Molecule: Multidrug efflux pump subunit AcrB

3D Structure

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Related Domains

Browse other domains in ACR_tran →

Classification

AArchitecturealpha bundles(a.7)

XX-groupMultidrug efflux transporter AcrB transmembrane domain(5067)

HH-groupMultidrug efflux transporter AcrB transmembrane domain(5067.1)

TT-groupMultidrug efflux transporter AcrB transmembrane domain(5067.1.1)

FFamilyACR_tran(5067.1.1.1)

Ligands

in contact, ≤ 4 Å

DecaneD10
DodecaneD12
HexaneHEX
PhosphatidylethanolaminePTY

Pfam Families

PF00873ACR_tran

AcrB/AcrD/AcrF family

ClanCL0322RND_permease

External Links

ECOD PDB View: 6Q4O RCSB PDB: 6Q4O PDBe: 6Q4O UniProt: P31224

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

+ 2 additives (Capric dimethyl amine oxide, Dodecyl-beta-d-maltoside)

Capric dimethyl amine oxideDDQ
DrugBank DB02613
Dodecyl-beta-d-maltosideLMT

Shown in the structure viewer. Drug annotations from DrugDomain.