ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1lojC1 - ECOD Domain | ECOD

ECOD/Domains/e1lojC1

e1lojC1

UID: 000025540

PDB

Range: C:11-82
PDB: 1LOJ chain C(all domains)
UniProt: O26745 (all domains)
Gene: MTH_649

Molecule: small nuclear ribonucleoprotein homolog (Sm-like)

3D Structure

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Related Domains

Browse other domains in LSM →

Classification

AArchitecturebeta barrels(a.1)

XX-groupSH3(4)

HH-groupSH3(4.1)

TT-groupSH3(4.1.1)

FFamilyLSM(4.1.1.19)

Ligands

in contact, ≤ 4 Å

Uridine monophosphateU
drugDrugBank DB03685
UridineURI
drugDrugBank DB02745

+ 1 additive ((4r)-2-Methylpentane-2,4-Diol)

Pfam Families

LSM domain

ClanCL0986Sm-like

External Links

ECOD PDB View: 1LOJ RCSB PDB: 1LOJ PDBe: 1LOJ UniProt: O26745

Downloads

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(4r)-2-Methylpentane-2,4-DiolMPD
DrugBank DB03564

Shown in the structure viewer. Drug annotations from DrugDomain.