ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6m8qA1 - ECOD Domain | ECOD

ECOD/Domains/e6m8qA1

e6m8qA1

UID: 002554246

PDB

Range: A:9-210,A:394-459
PDB: 6M8Q chain A(all domains)
UniProt: Q9UKF6 (all domains)
Gene: CPSF3

Molecule: Cleavage and polyadenylation specificity factor subunit 3

3D Structure

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Related Domains

Browse other domains in Lactamase_B,RMMBL →

Classification

AArchitecturea+b four layers(a.13)

XX-groupMetallo-hydrolase/oxidoreductase(247)

HH-groupMetallo-hydrolase/oxidoreductase(247.1)

TT-groupMetallo-hydrolase/oxidoreductase(247.1.1)

FFamilyLactamase_B,RMMBL(247.1.1.2)

Ligands

in contact, ≤ 4 Å

N-{3,5-dichloro-2-hydroxy-4-[2-(4-methylpiperazin-1-yl)ethoxy]benzene-1-carbonyl}-L-phenylalanineJBG
Zinc ionZN
metal

+ 1 additive (Phosphate ion)

Phosphate ion

Pfam Families

PF00753Lactamase_B

Metallo-beta-lactamase superfamily

ClanCL0381Metallo-HOrase

Zn-dependent metallo-hydrolase RNA specificity domain

ClanCL0398RMMBL_DRMBL

External Links

ECOD PDB View: 6M8Q RCSB PDB: 6M8Q PDBe: 6M8Q UniProt: Q9UKF6

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB14523

Shown in the structure viewer. Drug annotations from DrugDomain.