ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6ojkA1 - ECOD Domain | ECOD

ECOD/Domains/e6ojkA1

e6ojkA1

UID: 002554605

PDB

Range: A:27-568
PDB: 6OJK chain A(all domains)
UniProt: A0A0T9S209 (all domains)

Molecule: Periplasmic pectate lyase

3D Structure

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Related Domains

Browse other domains in Pectate_lyase_2 →

Classification

AArchitecturealpha superhelices(a.9)

XX-groupRepetitive alpha hairpins(109)

HH-groupalpha/alpha toroid(109.2)

TT-groupalpha/alpha toroid(109.2.1)

FFamilyPectate_lyase_2(109.2.1.21)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 1 additive (1,2-ETHANEDIOL)

1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF06917Pectate_lyase_2

Periplasmic pectate lyase

ClanCL00596_Hairpin

External Links

ECOD PDB View: 6OJK RCSB PDB: 6OJK PDBe: 6OJK UniProt: A0A0T9S209

Downloads

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