ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e6pdlF1 - ECOD Domain | ECOD

ECOD/Domains/e6pdlF1

e6pdlF1

UID: 002554828

PDB

Range: F:27-167
PDB: 6PDL chain F(all domains)
UniProt: P52799 (all domains)
Gene: EFNB2

Molecule: Ephrin-B2

3D Structure

Loading viewer...

Related Domains

Browse other domains in Ephrin →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupCupredoxin-like(3156)

HH-groupCupredoxin-related(3156.1)

TT-groupCupredoxin-related(3156.1.1)

FFamilyEphrin(3156.1.1.5)

Ligands

in contact, ≤ 4 Å

N-AcetylglucosamineNAG
drugDrugBank DB00141

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

Ephrin

ClanCL0026CU_oxidase

External Links

ECOD PDB View: 6PDL RCSB PDB: 6PDL PDBe: 6PDL UniProt: P52799

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure