ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6q55A1 - ECOD Domain | ECOD

ECOD/Domains/e6q55A1

e6q55A1

UID: 002555391

PDB

Range: A:20-233,A:421-480
PDB: 6Q55 chain A(all domains)
UniProt: A0A0S4TJL4 (all domains)
Gene: CHUDEA8_460

Molecule: Cleavage and Polyadenylation Specificity Factor 3 (CPSF3)

3D Structure

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Related Domains

Browse other domains in RMMBL,Lactamase_B_6 →

Classification

AArchitecturea+b four layers(a.13)

XX-groupMetallo-hydrolase/oxidoreductase(247)

HH-groupMetallo-hydrolase/oxidoreductase(247.1)

TT-groupMetallo-hydrolase/oxidoreductase(247.1.1)

FFamilyRMMBL,Lactamase_B_6(247.1.1.8)

Ligands

in contact, ≤ 4 Å

3-[7,7-bis(oxidanyl)-8-oxa-7-boranuidabicyclo[4.3.0]nona-1(6),2,4-trien-5-yl]propanoic acidHJB
Magnesium ionMG
metal
Zinc ionZN

Pfam Families

Zn-dependent metallo-hydrolase RNA specificity domain

ClanCL0398RMMBL_DRMBL

PF16661Lactamase_B_6

Metallo-beta-lactamase superfamily domain

ClanCL0381Metallo-HOrase

External Links

ECOD PDB View: 6Q55 RCSB PDB: 6Q55 PDBe: 6Q55 UniProt: A0A0S4TJL4

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

metal

+ 2 additives (Glycerin, Isopropyl alcohol)

GlycerinGOL
DrugBank DB09462
Isopropyl alcoholIPA
DrugBank DB02325

Shown in the structure viewer. Drug annotations from DrugDomain.