ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6r9uA1 - ECOD Domain | ECOD

ECOD/Domains/e6r9uA1

e6r9uA1

UID: 002555510

PDB

Range: A:44-207
PDB: 6R9U chain A(all domains)
UniProt: P30405 (all domains)
Gene: PPIF

Molecule: Peptidyl-prolyl cis-trans isomerase F, mitochondrial

3D Structure

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Related Domains

Browse other domains in Pro_isomerase →

Classification

AArchitecturebeta barrels(a.1)

XX-groupCyclophilin-like(75)

HH-groupCyclophilin-like(75.1)

TT-groupCyclophilin-like(75.1.1)

FFamilyPro_isomerase(75.1.1.1)

Ligands

in contact, ≤ 4 Å

14-ethyl-4,6-dioxa-10,14-diazatricyclo[7.6.0.0^{3,7}]pentadeca-1(9),2,7-trien-13-oneJVQ

+ 3 additives (Triethylene glycol, Sulfate ion, Tetraethylene glycol)

Triethylene glycolPGE
DrugBank DB02327
Sulfate ion

Pfam Families

PF00160Pro_isomerase

Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD

ClanCL0475Cyclophil-like

External Links

ECOD PDB View: 6R9U RCSB PDB: 6R9U PDBe: 6R9U UniProt: P30405

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB14546

Tetraethylene glycolPG4

Shown in the structure viewer. Drug annotations from DrugDomain.