ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6rotH1 - ECOD Domain | ECOD

ECOD/Domains/e6rotH1

e6rotH1

UID: 002555534

PDB

Range: H:16-246
PDB: 6ROT chain H(all domains)
UniProt: P00734 (all domains)
Gene: F2

Molecule: Prothrombin

3D Structure

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Related Domains

Browse other domains in Trypsin →

Classification

AArchitecturebeta barrels(a.1)

XX-groupcradle loop barrel(1)

HH-groupRIFT-related(1.1)

TT-groupFMN-binding split barrel 2(1.1.17)

FFamilyTrypsin(1.1.17.1)

Ligands

in contact, ≤ 4 Å

N-AcetylglucosamineNAG
drugDrugBank DB00141
(2~{S})-~{N}-[[5-chloranyl-2-(hydroxymethyl)phenyl]methyl]-1-[2-[(phenylmethyl)sulfonylamino]ethanoyl]pyrrolidine-2-carboxamideKDQ
Sodium ion

Pfam Families

PF00089Trypsin

Trypsin

ClanCL0124Peptidase_PA

External Links

ECOD PDB View: 6ROT RCSB PDB: 6ROT PDBe: 6ROT UniProt: P00734

Downloads

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metal

+ 2 additives (Dimethyl sulfoxide, Phosphate ion)

Dimethyl sulfoxideDMS
DrugBank DB01093
Phosphate ionPO4
DrugBank DB14523

Shown in the structure viewer. Drug annotations from DrugDomain.