ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6t9oC1 - ECOD Domain | ECOD

ECOD/Domains/e6t9oC1

e6t9oC1

UID: 002556032

PDB

Range: C:214-243,C:464-702
PDB: 6T9O chain C(all domains)
UniProt: Q13563 (all domains)
Gene: PKD2

Molecule: Polycystin-2

3D Structure

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Related Domains

Browse other domains in PKD_channel →

Classification

AArchitecturealpha complex topology(a.10)

XX-groupVoltage-gated ion channels(5054)

HH-groupVoltage-gated ion channels(5054.1)

TT-groupVoltage-gated ion channels(5054.1.1)

FFamilyPKD_channel(5054.1.1.9)

Ligands

in contact, ≤ 4 Å

CholesterolCLR
drugDrugBank DB04540
Undecyl-Beta-D-MaltopyranosideUMQ
drugDrugBank DB02686
N-Acetylglucosamine

Pfam Families

PF08016PKD_channel

Polycystin cation channel

ClanCL0030Ion_channel

External Links

ECOD PDB View: 6T9O RCSB PDB: 6T9O PDBe: 6T9O UniProt: Q13563

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

drugDrugBank DB00141within 5 Å only

Calcium ionCA

metal

Shown in the structure viewer. Drug annotations from DrugDomain.