ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1lnxC1 - ECOD Domain | ECOD

ECOD/Domains/e1lnxC1

e1lnxC1

UID: 000025564

PDB

Range: C:8-79
PDB: 1LNX chain C(all domains)
UniProt: Q8ZYG5 (all domains)
Gene: PAE0790

Molecule: small nuclear ribonucleoprotein homolog (Sm-like)

3D Structure

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Related Domains

Browse other domains in LSM →

Classification

AArchitecturebeta barrels(a.1)

XX-groupSH3(4)

HH-groupSH3(4.1)

TT-groupSH3(4.1.1)

FFamilyLSM(4.1.1.19)

Ligands

in contact, ≤ 4 Å

UridineURI
drugDrugBank DB02745

+ 2 additives (Acetic acid, Glycerin)

Acetic acidACY
DrugBank DB03166

Pfam Families

LSM domain

ClanCL0986Sm-like

External Links

ECOD PDB View: 1LNX RCSB PDB: 1LNX PDBe: 1LNX UniProt: Q8ZYG5

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Glycerin

DrugBank DB09462

Shown in the structure viewer. Drug annotations from DrugDomain.