ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6q04B4 - ECOD Domain | ECOD

ECOD/Domains/e6q04B4

e6q04B4

UID: 002559036

PDB

Range: B:18-352
PDB: 6Q04 chain B(all domains)
UniProt: K0BRG7 (all domains)
Gene: S

Molecule: Spike glycoprotein

3D Structure

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Related Domains

Browse other domains in bCoV_S1_N →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupjelly-roll(10)

HH-groupConcanavalin A-like(10.1)

TT-groupConcanavalin A-like lectins/glucanases(10.1.1)

FFamilybCoV_S1_N(10.1.1.39)

Ligands

in contact, ≤ 4 Å

Folic acidFOL
drugDrugBank DB00158
N-AcetylglucosamineNAG
drugDrugBank DB00141
N-acetyl-alpha-neuraminic acid

Pfam Families

PF16451bCoV_S1_N

Betacoronavirus-like spike glycoprotein S1, N-terminal

ClanCL0004Concanavalin

External Links

ECOD PDB View: 6Q04 RCSB PDB: 6Q04 PDBe: 6Q04 UniProt: K0BRG7

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

drugDrugBank DB03721

Shown in the structure viewer. Drug annotations from DrugDomain.