ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6hhdC1 - ECOD Domain | ECOD

ECOD/Domains/e6hhdC1

e6hhdC1

UID: 002560714

PDB

Range: C:119-225
PDB: 6HHD chain C(all domains)
UniProt: P04925 (all domains)
Gene: Prnp

Molecule: Major prion protein

3D Structure

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Related Domains

Browse other domains in Prion →

Classification

AArchitecturea+b two layers(a.11)

XX-groupPrion-like(254)

HH-groupPrion-like(254.1)

TT-groupPrion-like(254.1.1)

FFamilyPrion(254.1.1.1)

Ligands

in contact, ≤ 4 Å

Sodium ionNA
metal

+ 2 additives (Glycerin, Sulfate ion)

GlycerinGOL
DrugBank DB09462
Sulfate ionSO4

Pfam Families

Prion/Doppel alpha-helical domain

External Links

ECOD PDB View: 6HHD RCSB PDB: 6HHD PDBe: 6HHD UniProt: P04925

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.