ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6om1E2 - ECOD Domain | ECOD

ECOD/Domains/e6om1E2

e6om1E2

UID: 002560845

PDB

Range: E:1-440
PDB: 6OM1 chain E(all domains)
UniProt: P06756 (all domains)
Gene: ITGAV

Molecule: Integrin alpha-V

3D Structure

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Related Domains

Browse other domains in FG-GAP →

Classification

AArchitecturebeta duplicates or obligate multimers(a.4)

XX-groupbeta-propeller-like(5)

HH-groupbeta-propeller(5.1)

TT-group7-bladed(5.1.4)

FFamilyFG-GAP(5.1.4.13)

Ligands

in contact, ≤ 4 Å

N-AcetylglucosamineNAG
drugDrugBank DB00141within 5 Å only
Calcium ionCA
metal

+ 2 additives (2-(N-morpholino)ethanesulfonic acid, 1,2-ETHANEDIOL)

Pfam Families

FG-GAP repeat

ClanCL0186Beta_propeller

External Links

ECOD PDB View: 6OM1 RCSB PDB: 6OM1 PDBe: 6OM1 UniProt: P06756

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

2-(N-morpholino)ethanesulfonic acidMES
DrugBank DB03814
1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.