ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6om2D2 - ECOD Domain | ECOD

ECOD/Domains/e6om2D2

e6om2D2

UID: 002560861

PDB

Range: D:100-345
PDB: 6OM2 chain D(all domains)
UniProt: P26012 (all domains)
Gene: ITGB8

Molecule: Integrin beta-8

3D Structure

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Related Domains

Browse other domains in Integrin_beta →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupHAD domain-like(2006)

HH-groupHAD domain-related(2006.1)

TT-groupvWA-like(2006.1.6)

FFamilyIntegrin_beta(2006.1.6.2)

Ligands

in contact, ≤ 4 Å

GlycineGLY
drugDrugBank DB00145within 5 Å only
N-AcetylglucosamineNAG
drugDrugBank DB00141within 5 Å only

Pfam Families

PF00362Integrin_beta

Integrin beta chain VWA domain

ClanCL0128vWA-like

External Links

ECOD PDB View: 6OM2 RCSB PDB: 6OM2 PDBe: 6OM2 UniProt: P26012

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Calcium ionCA

metal

Magnesium ionMG

metal

Shown in the structure viewer. Drug annotations from DrugDomain.