ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6l8pB1 - ECOD Domain | ECOD

ECOD/Domains/e6l8pB1

e6l8pB1

UID: 002561429

PDB

Range: B:3-125
PDB: 6L8P chain B(all domains)
UniProt: A0A2N5LLK3 (all domains)

Molecule: RidA family protein

3D Structure

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Related Domains

Browse other domains in Ribonuc_L-PSP →

Classification

AArchitecturea+b three layers(a.12)

XX-groupBacillus chorismate mutase-like(301)

HH-groupYjgF-like(301.7)

TT-groupYjgF-like(301.7.1)

FFamilyRibonuc_L-PSP(301.7.1.1)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 1 additive (Malonate Ion)

Malonate IonMLI
DrugBank DB02201

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF01042Ribonuc_L-PSP

Endoribonuclease L-PSP

ClanCL0534YjgF-like

External Links

ECOD PDB View: 6L8P RCSB PDB: 6L8P PDBe: 6L8P UniProt: A0A2N5LLK3

Downloads

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