ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6m8pJ2 - ECOD Domain | ECOD

ECOD/Domains/e6m8pJ2

e6m8pJ2

UID: 002561477

PDB

Range: J:590-915
PDB: 6M8P chain J(all domains)
UniProt: Q9NZ08 (all domains)
Gene: ERAP1

Molecule: Endoplasmic reticulum aminopeptidase 1

3D Structure

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Related Domains

Browse other domains in ERAP1_C →

Classification

AArchitecturealpha superhelices(a.9)

XX-groupRepetitive alpha hairpins(109)

HH-groupARM repeat(109.4)

TT-groupARM repeat(109.4.1)

FFamilyERAP1_C(109.4.1.158)

Ligands

in contact, ≤ 4 Å

N-AcetylglucosamineNAG
drugDrugBank DB00141within 5 Å only
Nalpha-[(2S)-2-{[[(1R)-1-amino-3-phenylpropyl](hydroxy)phosphoryl]methyl}-4-methylpentanoyl]-L-tryptophanamideP52

+ 1 additive (Sulfate ion)

Pfam Families

PF11838ERAP1_C

ERAP1-like C-terminal domain

ClanCL0159E-set

External Links

ECOD PDB View: 6M8P RCSB PDB: 6M8P PDBe: 6M8P UniProt: Q9NZ08

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Sulfate ionSO4
DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.