ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6m8pS1 - ECOD Domain | ECOD

ECOD/Domains/e6m8pS1

e6m8pS1

UID: 002561512

PDB

Range: S:254-504
PDB: 6M8P chain S(all domains)
UniProt: Q9NZ08 (all domains)
Gene: ERAP1

Molecule: Endoplasmic reticulum aminopeptidase 1

3D Structure

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Related Domains

Browse other domains in Peptidase_M1 →

Classification

AArchitecturemixed a+b and a/b(a.18)

XX-groupZincin-like(2498)

HH-groupMetalloproteases ("zincins") catalytic domain(2498.1)

TT-groupMetalloproteases ("zincins") catalytic domain(2498.1.1)

FFamilyPeptidase_M1(2498.1.1.9)

Ligands

in contact, ≤ 4 Å

N-AcetylglucosamineNAG
drugDrugBank DB00141
Nalpha-[(2S)-2-{[[(1R)-1-amino-3-phenylpropyl](hydroxy)phosphoryl]methyl}-4-methylpentanoyl]-L-tryptophanamideP52
Zinc ion

Pfam Families

PF01433Peptidase_M1

Peptidase family M1 domain

ClanCL0126Peptidase_MA

External Links

ECOD PDB View: 6M8P RCSB PDB: 6M8P PDBe: 6M8P UniProt: Q9NZ08

Downloads

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metal

+ 1 additive (Sulfate ion)

Sulfate ionSO4

Shown in the structure viewer. Drug annotations from DrugDomain.