ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6u3mD1 - ECOD Domain | ECOD

ECOD/Domains/e6u3mD1

e6u3mD1

UID: 002563473

PDB

Range: D:3-92
PDB: 6U3M chain D(all domains)
UniProt: O19712 (all domains)
Gene: HLA-DQB1

Molecule: MHC class II HLA-DQ-beta-1

3D Structure

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Related Domains

Browse other domains in MHC_II_beta →

Classification

AArchitecturea+b two layers(a.11)

XX-groupMHC antigen-recognition domain(233)

HH-groupMHC antigen-recognition domain(233.1)

TT-groupMHC antigen-recognition domain(233.1.1)

FFamilyMHC_II_beta(233.1.1.2)

Ligands

in contact, ≤ 4 Å

N-AcetylglucosamineNAG
drugDrugBank DB00141within 5 Å only

+ 1 additive (Phosphate ion)

Phosphate ionPO4
DrugBank DB14523

Pfam Families

PF00969MHC_II_beta

Class II histocompatibility antigen, beta domain

ClanCL0343MHC

External Links

ECOD PDB View: 6U3M RCSB PDB: 6U3M PDBe: 6U3M UniProt: O19712

Downloads

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Shown in the structure viewer. Drug annotations from DrugDomain.