ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6spnA2 - ECOD Domain | ECOD

ECOD/Domains/e6spnA2

e6spnA2

UID: 002565085

PDB

Range: A:4-117,A:190-325
PDB: 6SPN chain A(all domains)
UniProt: A0A0F3U9S7 (all domains)

Molecule: Methionine--tRNA ligase

3D Structure

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Related Domains

Browse other domains in tRNA-synt_1g →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupHUP domain-like(2005)

HH-groupHUP domains(2005.1)

TT-groupHUP domains(2005.1.1)

FFamilytRNA-synt_1g(2005.1.1.29)

Ligands

in contact, ≤ 4 Å

(3R)-3-amino-5-(methylsulfanyl)pentanoic acidB3M

+ 1 additive (Citric acid)

Citric acidCIT
DrugBank DB04272

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF09334tRNA-synt_1g

tRNA synthetases class I (M)

ClanCL0039HUP

External Links

ECOD PDB View: 6SPN RCSB PDB: 6SPN PDBe: 6SPN UniProt: A0A0F3U9S7

Downloads

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