ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e6smnA2 - ECOD Domain | ECOD

ECOD/Domains/e6smnA2

e6smnA2

UID: 002568476

PDB

Range: A:43-349
PDB: 6SMN chain A(all domains)
UniProt: Q94C74 (all domains)
Gene: SHM2

Molecule: Serine hydroxymethyltransferase 2, mitochondrial

3D Structure

Loading viewer...

Related Domains

Browse other domains in SHMT →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupPLP-dependent transferases(7577)

HH-groupPLP-dependent transferases(7577.1)

TT-groupPLP-dependent transferases(7577.1.1)

FFamilySHMT(7577.1.1.5)

Ligands

in contact, ≤ 4 Å

MethotrexateMTX
drugDrugBank DB00563
[3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHYL]-SERINEPLS

+ 1 additive (1,2-ETHANEDIOL)

1,2-ETHANEDIOL

Pfam Families

Serine hydroxymethyltransferase

ClanCL0061PLP_aminotran

External Links

ECOD PDB View: 6SMN RCSB PDB: 6SMN PDBe: 6SMN UniProt: Q94C74

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Shown in the structure viewer. Drug annotations from DrugDomain.