ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6smnC2 - ECOD Domain | ECOD

ECOD/Domains/e6smnC2

e6smnC2

UID: 002568480

PDB

Range: C:43-349
PDB: 6SMN chain C(all domains)
UniProt: Q94C74 (all domains)
Gene: SHM2

Molecule: Serine hydroxymethyltransferase 2, mitochondrial

3D Structure

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Related Domains

Browse other domains in SHMT →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupPLP-dependent transferases(7577)

HH-groupPLP-dependent transferases(7577.1)

TT-groupPLP-dependent transferases(7577.1.1)

FFamilySHMT(7577.1.1.5)

Ligands

in contact, ≤ 4 Å

MethotrexateMTX
drugDrugBank DB00563
SerineSER
drugDrugBank DB00133
[3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHYL]-SERINE

Pfam Families

Serine hydroxymethyltransferase

ClanCL0061PLP_aminotran

External Links

ECOD PDB View: 6SMN RCSB PDB: 6SMN PDBe: 6SMN UniProt: Q94C74

Downloads

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+ 1 additive (1,2-ETHANEDIOL)

1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.