ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6nmmC1 - ECOD Domain | ECOD

ECOD/Domains/e6nmmC1

e6nmmC1

UID: 002570299

PDB

Range: C:126-253
PDB: 6NMM chain C(all domains)
UniProt: Q57514 (all domains)

Molecule: Kanamycin nucleotidyltransferase

3D Structure

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Related Domains

Browse other domains in KNTase_C →

Classification

AArchitecturealpha bundles(a.7)

XX-groupFour-helical up-and-down bundle(601)

HH-groupHEPN(601.7)

TT-groupNucleotidyltransferase substrate binding subunit/domain(601.7.1)

FFamilyKNTase_C(601.7.1.5)

Ligands

in contact, ≤ 4 Å

FramycetinNMY
drugDrugBank DB00452
Pyrophosphoric acidPPV
drugDrugBank DB04160
Adenosine phosphate

Pfam Families

PF07827KNTase_C

KNTase C-terminal domain

ClanCL0291KNTase_C

External Links

ECOD PDB View: 6NMM RCSB PDB: 6NMM PDBe: 6NMM UniProt: Q57514

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

drugDrugBank DB00131within 5 Å only

Magnesium ionMG

metal

Shown in the structure viewer. Drug annotations from DrugDomain.