ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6nmoB1 - ECOD Domain | ECOD

ECOD/Domains/e6nmoB1

e6nmoB1

UID: 002570308

PDB

Range: B:1-159
PDB: 6NMO chain B(all domains)
UniProt: Q3JRA0 (all domains)
Gene: ispF

Molecule: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase

3D Structure

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Related Domains

Browse other domains in YgbB →

Classification

AArchitecturea+b three layers(a.12)

XX-groupBacillus chorismate mutase-like(301)

HH-group2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase IspF(301.5)

TT-group2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase IspF(301.5.1)

FFamilyYgbB(301.5.1.1)

Ligands

in contact, ≤ 4 Å

Zinc ionZN
metal

+ 2 additives (Malonate Ion, 1,2-ETHANEDIOL)

Malonate IonMLI
DrugBank DB02201
1,2-ETHANEDIOL

Pfam Families

YgbB family

External Links

ECOD PDB View: 6NMO RCSB PDB: 6NMO PDBe: 6NMO UniProt: Q3JRA0

Downloads

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Shown in the structure viewer. Drug annotations from DrugDomain.