ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6siyB2 - ECOD Domain | ECOD

ECOD/Domains/e6siyB2

e6siyB2

UID: 002570592

PDB

Range: B:1-254
PDB: 6SIY chain B(all domains)
UniProt: A0A022MRT4 (all domains)
Gene: natL2

Molecule: AMP-dependent synthetase and ligase

3D Structure

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Related Domains

Browse other domains in AMP-binding →

Classification

AArchitecturea+b complex topology(a.14)

XX-groupCoA-dependent acyltransferases(323)

HH-groupCoA-dependent acyltransferases(323.1)

TT-groupCoA-dependent acyltransferases(323.1.1)

FFamilyAMP-binding(323.1.1.3)

Ligands

in contact, ≤ 4 Å

3-hydroxyanthranilic acid3HA
drugDrugBank DB03644
Adenosine phosphateAMP
drugDrugBank DB00131

Pfam Families

PF00501AMP-binding

AMP-binding enzyme

ClanCL0378ANL

External Links

ECOD PDB View: 6SIY RCSB PDB: 6SIY PDBe: 6SIY UniProt: A0A022MRT4

Downloads

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Magnesium ion

metal

Zinc ionZN

metal

+ 1 additive (1,2-ETHANEDIOL)

1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.