ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6t48C1 - ECOD Domain | ECOD

ECOD/Domains/e6t48C1

e6t48C1

UID: 002570625

PDB

Range: C:1-243
PDB: 6T48 chain C(all domains)
UniProt: Q2LKZ0 (all domains)

Molecule: VP3

3D Structure

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Related Domains

Browse other domains in Rhv →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupjelly-roll(10)

HH-groupNucleoplasmin-like/VP (viral coat and capsid proteins)(10.2)

TT-groupNucleoplasmin-like/VP (viral coat and capsid proteins)(10.2.1)

FFamilyRhv(10.2.1.1)

Ligands

in contact, ≤ 4 Å

CysteineCYS
drugDrugBank DB00151
GlycineGLY
drugDrugBank DB00145
Glutathione

Pfam Families

picornavirus capsid protein

ClanCL0055Nucleoplasmin

External Links

ECOD PDB View: 6T48 RCSB PDB: 6T48 PDBe: 6T48 UniProt: Q2LKZ0

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

drugDrugBank DB00143

Stearic acidSTE

drugDrugBank DB03193

Chloride ionCL

Potassium ionK

metal

+ 1 additive (Sulfate ion)

Sulfate ionSO4
DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.