ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6j74B1 - ECOD Domain | ECOD

ECOD/Domains/e6j74B1

e6j74B1

UID: 002572576

PDB

Range: B:4-331
PDB: 6J74 chain B(all domains)
UniProt: P53611 (all domains)
Gene: RABGGTB

Molecule: Geranylgeranyl transferase type-2 subunit beta

3D Structure

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Related Domains

Browse other domains in Prenyltrans →

Classification

AArchitecturealpha superhelices(a.9)

XX-groupRepetitive alpha hairpins(109)

HH-groupalpha/alpha toroid(109.2)

TT-groupalpha/alpha toroid(109.2.1)

FFamilyPrenyltrans(109.2.1.1)

Ligands

in contact, ≤ 4 Å

Zinc ionZN
metal

+ 1 additive (Phosphate ion)

Phosphate ionPO4
DrugBank DB14523

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF00432Prenyltrans

Prenyltransferase alpha-alpha toroid domain

ClanCL00596_Hairpin

External Links

ECOD PDB View: 6J74 RCSB PDB: 6J74 PDBe: 6J74 UniProt: P53611

Downloads

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